PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014892
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family YABBY
Protein Properties Length: 210aa    MW: 23661.8 Da    PI: 8.8546
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014892genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2206.9e-6871813170
        YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkveeenlksnvekeesas 93 
                  v  ++eq+Cy+ CnfCn +lavsvP +sl+++vtvrCGhC++l svn+a a+ +  ++ + +++ +++       l++++  ++    ++ +  +s+s
  DCAR_014892   7 VSAATEQLCYIPCNFCNIVLAVSVPCSSLYEIVTVRCGHCSNLWSVNMAAAAFQALSTWQ-EHQPHQPilmytiyLTDKQAPNSGYSPEYRSDMSSSS 103
                  67799******************************************9998854444443.2333333455664322222222222333333444444 PP

        YABBY  94 tsvsseklsenedeev.prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  + +s++k+++       p++  v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  DCAR_014892 104 SARSNNKITTRPLPINpPEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 181
                  44555555444443330344449*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-6910181IPR006780YABBY protein
SuperFamilySSF470953.01E-8120174IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.6E-4128175IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSCINVSAA TEQLCYIPCN FCNIVLAVSV PCSSLYEIVT VRCGHCSNLW SVNMAAAAFQ  60
ALSTWQEHQP HQPILMYTIY LTDKQAPNSG YSPEYRSDMS SSSSARSNNK ITTRPLPINP  120
PEQRVVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG  180
LMLESNNNQS KLDENAAKFR MPRSAYLNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285328.11e-91PREDICTED: axial regulator YABBY 5 isoform X1
SwissprotQ8GW464e-79YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD7TC401e-91D7TC40_VITVI; Putative uncharacterized protein
STRINGVIT_11s0016g05590.t014e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-76YABBY family protein